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GEO accession:
Sample GSM60169
Query DataSets for GSM60169
Status
Public on Jun 10, 2005
Title
acetylated histone H3 in HeLa cell, 0 minute - rep1 of 5
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using acetylated histone H3 antibody
Organism
Homo sapiens
Characteristics
Chromatin immunoprecipitated DNA using acetylated histone H3 antibody
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
input DNA
Organism
Homo sapiens
Characteristics
input DNA
Extracted molecule
genomic DNA
Label
Cy3
Description
Genome-wide location analysis of acetylated histone H3 binding using RenLab ENCODE PCR tiling array. Array ID is ENC385. Replicate 1 of 5.
Data processing
Single-Array Error Model
Submission date
Jun 03, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
0.070804
2.18668258e-02
4.51845760e-01
99.24019
94.48733
80
106
102
99
113
84
293
306
99
294
296
82
2
0.061157
2.10053765e-02
4.53734106e-01
251.14370
240.72000
406
444
219
95
112
84
638
645
155
296
303
84
3
-0.130259
-5.14170504e-02
6.11991984e-01
908.58349
994.43561
852
844
345
96
112
81
1012
993
237
296
304
87
4
-0.382072
-1.44007193e-01
7.87233608e-01
364.72142
475.30945
499
526
208
95
109
77
776
789
172
304
312
86
5
-0.360144
-1.34097161e-01
7.70963116e-01
291.48578
374.13784
432
465
195
88
109
90
732
731
134
291
293
70
6
-0.034520
-1.15286686e-02
5.25432682e-01
264.08236
270.47742
426
455
263
96
121
209
671
665
181
291
300
92
7
0.108421
3.73205680e-02
4.18195426e-01
99.14853
91.97044
91
113
81
92
108
78
279
286
64
288
292
70
8
0.110987
3.81657630e-02
4.16369881e-01
98.01816
90.76036
86
108
79
91
104
73
285
278
65
287
288
67
9
0.115053
3.98767775e-02
4.12679802e-01
99.11161
91.51457
108
118
73
95
110
81
270
275
69
280
282
65
10
0.052218
1.82923140e-02
4.59687934e-01
99.14371
95.61939
79
93
70
92
118
118
295
294
70
274
287
250
11
0.786182
2.38968351e-01
9.30301760e-02
594.51916
344.74775
693
741
422
103
125
100
626
696
484
280
291
89
12
0.188732
7.03834501e-02
3.48466250e-01
455.20699
399.38787
578
615
272
100
124
130
712
724
164
277
290
96
13
0.085148
3.08118371e-02
4.32309913e-01
306.80253
289.21910
466
504
225
103
120
114
653
659
138
277
285
114
14
-0.004033
-1.52361847e-03
5.03363400e-01
436.96680
438.19005
591
594
258
101
116
85
742
755
163
288
292
75
15
0.104650
2.49809274e-02
4.45028861e-01
133.75939
124.40029
208
282
233
138
182
169
448
486
195
333
344
105
16
0.699679
2.34539026e-01
9.71755823e-02
317.86391
195.71176
483
524
235
104
126
132
550
557
124
290
312
244
17
0.197212
7.18612812e-02
3.45447003e-01
347.67564
303.25461
545
533
239
94
113
84
670
664
136
275
282
73
18
0.230369
7.22158609e-02
3.44724039e-01
168.02643
143.22860
280
324
191
102
116
83
467
478
106
264
268
69
19
-0.140048
-5.59016670e-02
6.21464783e-01
1327.81559
1463.17504
1145
1156
432
94
113
81
1150
1120
234
274
278
92
20
0.372537
1.41519340e-01
2.16786314e-01
601.46169
464.58269
665
704
279
97
115
94
766
761
161
275
282
84
Total number of rows:
25392
Table truncated, full table size
2799 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60169.gpr.gz
2.2 Mb
(ftp)
(http)
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