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GEO accession:
Sample GSM60174
Query DataSets for GSM60174
Status
Public on Jun 10, 2005
Title
acetylated histone H3 in HeLa cell, 30 minutes - rep1 of 5
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using acetylated histone H3 antibody
Organism
Homo sapiens
Characteristics
Chromatin immunoprecipitated DNA using acetylated histone H3 antibody
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
input DNA
Organism
Homo sapiens
Characteristics
input DNA
Extracted molecule
genomic DNA
Label
Cy3
Description
Genome-wide location analysis of acetylated histone H3 binding using RenLab ENCODE PCR tiling array. Array ID is ENC386. Replicate 1 of 5.
Data processing
Single-Array Error Model
Submission date
Jun 03, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
0.359047
1.14068392e-01
2.47874447e-01
210.81930
164.37142
405
417
212
110
129
92
644
643
134
327
332
86
2
0.465418
1.52552604e-01
1.81144046e-01
289.09752
209.38207
478
512
247
117
139
109
667
665
169
312
319
83
3
0.039188
1.56362747e-02
4.62802141e-01
950.28795
924.82270
808
823
273
122
146
114
1024
1020
214
310
317
84
4
-0.626170
-2.27105420e-01
9.12486749e-01
345.46459
533.21154
486
505
225
113
135
107
841
851
227
291
298
73
5
0.123229
4.33108167e-02
3.97955125e-01
309.47534
284.13873
486
501
221
104
122
88
720
719
198
295
296
72
6
0.167663
6.14874332e-02
3.56738378e-01
396.25914
352.78304
564
560
220
106
125
92
773
759
215
286
293
77
7
0.011893
4.04395928e-03
4.90366592e-01
105.21602
104.35221
99
123
89
101
117
84
297
306
78
291
290
73
8
0.014812
5.16217956e-03
4.87703550e-01
102.30944
101.26443
111
119
79
99
119
87
299
301
70
292
294
71
9
0.007146
2.42952202e-03
4.94212100e-01
106.16145
105.63693
110
125
94
102
119
83
306
307
74
286
291
70
10
0.009114
3.13433483e-03
4.92533184e-01
105.28998
104.62695
103
116
86
95
113
82
291
295
75
279
282
69
11
-0.103604
-1.72427176e-02
5.41006642e-01
451.92988
485.57789
473
577
798
102
120
87
624
823
1593
287
293
77
12
-1.532898
-4.90793879e-01
9.98310220e-01
251.39126
727.44219
375
387
194
103
122
90
928
923
224
287
295
87
13
-0.511186
-1.73762543e-01
8.50289391e-01
227.66553
324.47378
376
405
198
102
121
85
731
743
212
282
286
73
14
0.010304
3.54771536e-03
4.91548541e-01
363.09628
360.51211
470
528
337
101
115
84
785
753
200
274
278
70
15
0.546913
1.88405749e-01
1.30268739e-01
320.92630
219.66858
484
523
231
100
117
82
623
630
133
269
273
71
16
0.487751
1.69109964e-01
1.56273737e-01
322.79309
230.19541
494
516
207
94
111
83
642
647
175
274
277
70
17
0.867244
2.96375136e-01
3.83724507e-02
428.80368
235.06725
566
602
256
99
133
494
630
641
132
262
272
138
18
0.499924
1.54305511e-01
1.78399460e-01
192.19026
135.90619
369
391
190
99
114
79
497
504
131
260
266
70
19
-0.428561
-1.69168096e-01
8.43809419e-01
1498.53575
2016.86525
1162
1189
435
96
112
80
1304
1286
328
260
264
70
20
0.254072
9.49471053e-02
2.85355312e-01
535.59075
449.10699
619
626
274
90
109
77
789
781
226
261
266
76
Total number of rows:
25392
Table truncated, full table size
2801 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60174.gpr.gz
2.2 Mb
(ftp)
(http)
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