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GEO accession:
Sample GSM60175
Query DataSets for GSM60175
Status
Public on Jun 10, 2005
Title
acetylated histone H3 in HeLa cell, 30 minutes - rep2 of 5
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using acetylated histone H3 antibody
Organism
Homo sapiens
Characteristics
Chromatin immunoprecipitated DNA using acetylated histone H3 antibody
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
input DNA
Organism
Homo sapiens
Characteristics
input DNA
Extracted molecule
genomic DNA
Label
Cy3
Description
Genome-wide location analysis of acetylated histone H3 binding using RenLab ENCODE PCR tiling array. Array ID is ENC602. Replicate 2 of 5.
Data processing
Single-Array Error Model
Submission date
Jun 03, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
0.133472
3.90077303e-02
3.69993117e-01
200.94756
183.19082
472
491
244
83
95
65
751
771
203
350
365
200
2
0.231953
6.61402567e-02
2.86815913e-01
401.02065
341.46163
783
796
276
84
96
69
980
1035
579
349
355
101
3
0.202834
7.18045734e-02
2.70632260e-01
751.20959
652.68242
1162
1156
513
80
91
65
1268
1283
440
321
325
97
4
0.169169
6.35496609e-02
2.94367383e-01
557.97247
496.23538
977
965
291
81
91
63
1141
1133
237
308
318
106
5
0.280386
1.05113520e-01
1.85583605e-01
603.24129
496.69107
988
1015
316
82
92
62
1129
1130
220
305
313
89
6
0.319888
1.16719273e-01
1.60347901e-01
508.45174
407.33706
914
914
300
83
94
71
1040
1043
222
292
302
112
7
0.457174
1.45676765e-01
1.07599665e-01
252.22715
183.72517
558
577
225
84
95
66
697
716
174
304
318
166
8
-0.772465
-2.72924145e-01
9.89883405e-01
534.76827
913.48343
933
930
348
83
93
65
1520
1504
437
328
334
94
9
-0.087100
-2.82985105e-02
5.95129137e-01
204.57426
217.30548
505
521
189
86
97
70
818
830
196
320
329
110
10
0.155642
4.72191132e-02
3.43940371e-01
140.11218
125.78329
359
352
128
85
96
63
562
572
157
309
313
80
11
1.213873
3.96208082e-01
3.74648618e-04
555.73925
239.58467
942
951
261
84
101
77
817
830
203
296
307
118
12
0.078153
3.08072021e-02
3.96621100e-01
1242.49561
1176.97856
1712
1717
450
83
152
703
1661
1653
320
277
331
532
13
-0.039974
-1.50588755e-02
5.50972411e-01
590.59924
607.19239
983
991
314
78
112
421
1175
1183
287
264
296
443
14
-0.123915
-4.51169371e-02
6.49454348e-01
504.91072
550.19519
923
896
331
72
85
64
1148
1116
308
247
252
81
15
0.292545
1.03546503e-01
1.89170491e-01
385.43018
314.68860
743
773
275
77
89
65
914
894
186
242
248
70
16
-0.062353
-2.13600559e-02
5.72101891e-01
319.28868
333.39087
693
699
280
75
83
59
933
922
225
248
252
75
17
0.284313
1.10495176e-01
1.73589439e-01
786.26033
645.62376
1149
1186
293
73
85
61
1212
1214
209
257
258
72
18
0.209532
6.74969311e-02
2.82898245e-01
233.06306
201.55711
530
546
220
72
83
58
697
705
181
239
245
78
19
-0.470655
-1.76879925e-01
9.33820776e-01
1089.00759
1509.07942
1514
1561
549
76
89
65
2002
1888
593
242
252
83
20
-0.146412
-5.29401080e-02
6.73791153e-01
593.93222
657.37230
1017
991
390
77
87
58
1204
1206
392
243
247
69
Total number of rows:
25392
Table truncated, full table size
2784 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60175.gpr.gz
2.2 Mb
(ftp)
(http)
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