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GEO accession:
Sample GSM60194
Query DataSets for GSM60194
Status
Public on Jun 10, 2005
Title
STAT1 binding in HeLa cell, 0 minute - rep3 of 5
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using STAT1 antibody
Organism
Homo sapiens
Characteristics
Chromatin immunoprecipitated DNA using STAT1 antibody
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
input DNA
Organism
Homo sapiens
Characteristics
input DNA
Extracted molecule
genomic DNA
Label
Cy3
Description
Genome-wide location analysis of STAT1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC525. Replicate 3 of 5.
Data processing
Single-Array Error Model
Submission date
Jun 03, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
-0.026859
-1.04439561e-02
5.34767025e-01
745
759
1131
1119
346
77
86
56
975
988
220
198
202
58
2
0.074121
2.94188149e-02
4.02921471e-01
1258
1195
1458
1524
411
74
83
56
1230
1233
286
204
207
51
3
-0.081408
-3.26438933e-02
6.07472586e-01
2739
2898
2599
2499
729
73
84
59
2189
2118
544
200
203
72
4
0.192811
7.35551652e-02
2.69426333e-01
1239
1084
1565
1510
623
73
81
51
1177
1163
387
194
197
51
5
0.112055
4.42341713e-02
3.55850040e-01
1579
1461
1774
1749
568
73
89
136
1378
1364
360
195
238
1026
6
0.181470
7.05655069e-02
2.77739319e-01
1286
1134
1542
1539
533
70
85
73
1208
1194
350
199
213
188
7
0.156315
5.96289192e-02
3.09172961e-01
633
568
1027
1032
337
73
83
57
847
853
182
193
199
52
8
0.272938
1.09450732e-01
1.80239125e-01
2251
1863
2204
2183
456
76
88
69
1603
1603
254
200
206
63
9
0.158182
6.08422360e-02
3.05609860e-01
520
466
910
929
257
77
89
69
774
778
140
200
205
63
10
0.097067
3.70996168e-02
3.78293775e-01
292
273
438
444
154
75
87
60
446
440
92
202
206
66
11
0.246747
8.78338233e-02
2.31521234e-01
916
772
1198
1274
681
77
103
120
972
996
397
201
212
90
12
0.139845
5.66186350e-02
3.18090455e-01
4254
3861
3564
3501
695
78
103
151
2665
2610
414
203
215
140
13
0.184357
7.35430894e-02
2.69459659e-01
1934
1702
1994
1985
543
79
93
67
1527
1509
315
203
208
58
14
0.271302
1.06745540e-01
1.86236011e-01
1365
1131
1630
1607
445
81
94
65
1256
1203
287
210
214
58
15
0.395541
1.30932974e-01
1.36991308e-01
588
447
1034
1026
533
78
89
58
810
762
300
203
207
57
16
0.088710
3.48976832e-02
3.85308469e-01
1157
1088
1427
1449
438
74
87
57
1202
1180
292
208
209
60
17
-0.002367
-9.51772877e-04
5.03172357e-01
1827
1830
1875
1915
490
83
93
61
1606
1578
257
202
206
57
18
0.330323
1.18562843e-01
1.60944060e-01
474
377
936
897
334
78
90
67
704
691
172
208
211
55
19
0.225461
8.99807353e-02
2.26090622e-01
3138
2684
2874
2795
786
86
98
96
2105
2021
535
210
213
56
20
0.227909
9.00963097e-02
2.25800333e-01
1834
1566
1984
1932
580
84
92
58
1449
1439
370
209
214
58
Total number of rows:
25392
Table truncated, full table size
2512 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60194.gpr.gz
2.1 Mb
(ftp)
(http)
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