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GEO accession:
Sample GSM60195
Query DataSets for GSM60195
Status
Public on Jun 10, 2005
Title
STAT1 binding in HeLa cell, 0 minute - rep4 of 5
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using STAT1 antibody
Organism
Homo sapiens
Characteristics
Chromatin immunoprecipitated DNA using STAT1 antibody
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
input DNA
Organism
Homo sapiens
Characteristics
input DNA
Extracted molecule
genomic DNA
Label
Cy3
Description
Genome-wide location analysis of STAT1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC790. Replicate 4 of 5.
Data processing
Single-Array Error Model
Submission date
Jun 03, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
0.422878
1.41412368e-01
3.11155604e-03
984
734
3998
3912
848
157
199
228
2846
2848
486
441
455
153
2
0.018706
5.57677962e-03
4.57041739e-01
1242
1226
4600
4486
1576
111
304
993
3666
3500
1167
315
488
904
3
0.070072
2.50389979e-02
3.14047906e-01
5463
5204
14012
13009
4137
101
147
269
10018
9601
2812
279
296
154
4
0.040077
1.43489060e-02
3.90661100e-01
2409
2343
7019
6846
1780
103
151
308
5183
5201
1314
279
294
158
5
0.099167
3.67985897e-02
2.38259690e-01
2514
2347
7107
7048
1415
94
129
198
5338
5208
1249
275
295
196
6
0.141503
4.80778720e-02
1.76153765e-01
2023
1834
6377
6066
1769
89
118
136
4672
4404
1260
277
288
116
7
0.247597
7.33514343e-02
7.79393885e-02
818
689
3518
3474
984
90
114
118
2607
2593
691
275
282
107
8
-0.069159
-2.49195595e-02
6.85131860e-01
1955
2051
6203
5916
1521
87
123
210
4867
4732
983
279
290
118
9
0.334419
9.43967570e-02
3.39088778e-02
580
460
2855
2831
785
87
112
147
2115
2069
459
269
279
100
10
0.093109
1.81330229e-02
3.62867484e-01
240
225
1323
1427
607
82
101
80
1111
1164
400
272
278
84
11
0.670385
2.05389163e-01
3.54129759e-05
861
541
3448
3494
861
81
107
125
2251
2280
444
275
284
117
12
0.013828
5.49399678e-03
4.57677004e-01
4403
4361
11018
10849
1511
88
228
987
8384
8295
925
275
356
681
13
0.129011
4.86916155e-02
1.73097256e-01
1660
1518
5329
5312
996
91
187
580
3960
3909
476
273
327
386
14
0.298832
6.63888171e-02
9.95063605e-02
914
743
3769
3701
1807
87
105
90
2562
2692
1171
267
276
87
15
0.332297
6.93656133e-02
8.98046372e-02
768
610
3151
3337
1644
85
107
86
2384
2434
1049
272
279
88
16
-0.001322
-4.19244289e-04
5.03235694e-01
1091
1092
4373
4126
1226
87
115
127
3363
3255
869
275
284
97
17
0.131092
4.78806995e-02
1.77142912e-01
1796
1640
5752
5597
1157
88
115
135
4232
4107
871
279
288
107
18
0.206209
4.46536549e-02
1.93827659e-01
458
397
2388
2449
955
90
113
96
1865
1889
652
278
285
95
19
0.140744
4.96244479e-02
1.68516768e-01
2808
2547
7800
7625
2155
82
112
148
5690
5525
1524
275
282
111
20
0.111480
3.87528339e-02
2.26711990e-01
1802
1668
5859
5604
1502
83
117
152
4326
4148
1009
277
285
104
Total number of rows:
25392
Table truncated, full table size
2592 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60195.gpr.gz
2.2 Mb
(ftp)
(http)
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