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GEO accession:
Sample GSM60197
Query DataSets for GSM60197
Status
Public on Jun 10, 2005
Title
STAT1 binding in HeLa cell, 30 minutes - rep1 of 5
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using STAT1 antibody
Organism
Homo sapiens
Characteristics
Chromatin immunoprecipitated DNA using STAT1 antibody
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
input DNA
Organism
Homo sapiens
Characteristics
input DNA
Extracted molecule
genomic DNA
Label
Cy3
Description
Genome-wide location analysis of STAT1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC752. Replicate 1 of 5.
Data processing
Single-Array Error Model
Submission date
Jun 03, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
0.164891
5.92786307e-02
2.35066879e-01
1565.2393
1396.1874
3813
3710
963
174
250
339
5183
5179
933
961
1012
430
2
0.084452
2.82634888e-02
3.65285001e-01
1839.7128
1735.1117
4122
4117
1385
166
219
206
5744
5802
1603
965
986
318
3
0.176232
6.17594255e-02
2.25878857e-01
6723.9282
5950.7549
12516
11755
4108
163
251
810
15854
14657
4874
972
999
488
4
0.005108
1.83886055e-03
4.91062444e-01
2448.1709
2439.5185
5082
5078
1471
166
215
216
7386
7199
1666
993
1005
319
5
0.020259
7.51321892e-03
4.63530808e-01
2933.2668
2892.3645
5914
5855
1593
176
264
459
8228
8168
1632
1019
1077
596
6
0.161057
5.61676063e-02
2.46875147e-01
2150.8367
1923.6429
4444
4609
1392
175
279
944
6240
6225
1560
1009
1035
370
7
0.544401
1.37224609e-01
4.72652004e-02
938.3309
643.3909
2704
2744
1098
187
466
3268
3892
3867
1245
1005
1634
5574
8
-0.570165
-2.13667891e-01
9.95384357e-01
3043.6670
4518.9117
6077
6115
1332
180
263
401
11684
11581
1775
995
1122
1473
9
-0.032063
-8.53948249e-03
5.41433809e-01
556.1396
568.6377
1981
2091
776
161
216
213
3548
3678
793
969
1001
344
10
0.114118
1.88012305e-02
4.09404320e-01
248.8433
229.9181
1168
1236
638
150
203
188
2026
2125
664
947
961
302
11
-0.008419
-2.44877293e-03
5.11901191e-01
1307.4548
1315.1071
3213
3322
1405
168
213
214
4801
5024
1685
959
989
324
12
-0.174978
-6.63043038e-02
7.90415416e-01
5041.2169
5691.2676
9325
9188
2163
171
254
412
14453
14118
2864
967
1030
500
13
0.249547
9.30674410e-02
1.28407689e-01
2508.4299
2109.9925
5033
5145
1212
177
263
481
6522
6529
1178
955
1025
574
14
-0.446620
-1.33299128e-01
9.47827078e-01
1497.4397
2040.7755
3607
3656
1408
183
225
208
6428
6343
2325
964
988
325
15
0.387093
1.10969815e-01
8.81754917e-02
1145.4942
875.9238
3017
3076
1168
174
219
193
4196
4293
1242
971
995
318
16
0.125332
4.32154356e-02
2.99254938e-01
1595.5845
1462.8204
3779
3762
1189
172
220
216
5260
5306
1130
966
989
313
17
0.335759
1.16226649e-01
7.83692693e-02
2449.4281
1940.8469
5056
5040
1529
163
211
198
6339
6232
1657
968
988
304
18
0.531356
1.12935656e-01
8.44064467e-02
557.4028
385.6693
1917
2064
938
172
223
224
3049
3088
878
978
994
320
19
0.063566
2.36138710e-02
3.86782214e-01
3238.1234
3098.5465
6207
6294
1572
170
232
278
8688
8554
1882
978
1001
351
20
0.044854
1.67225726e-02
4.19274115e-01
2336.8191
2265.2838
4781
4908
1275
173
229
252
6864
6821
1192
956
986
360
Total number of rows:
25392
Table truncated, full table size
2972 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60197.gpr.gz
2.3 Mb
(ftp)
(http)
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