|
| Status |
Public on Apr 30, 2023 |
| Title |
TF ChIP-seq from HCT116 (ENCLB137JDC) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CDK7
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: CTCF
line: HCT116
biomaterial_type: cell line
biosample encode accession: ENCBS385ZCY (SAMN34251648)
Sex: male
health state: colorectal carcinoma
dev stage: adult
age: 48 year
donor_id: ENCDO000ABE
lab: Bradley Bernstein, Broad
source: Erez Aiden
link: ENCBS385ZCY at ENCODE; https://www.encodeproject.org/ENCBS385ZCY/
link: derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/801dd1e1-5e10-4792-b848-b094380d1444/@@download/attachment/Crosslinking%20Cells%20v4.0.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR979ZEO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR979ZEO
assay title: TF ChIP-seq
assembly: GRCh38
possible controls: ENCSR621MTI
encode release date: 2022-07-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB137JDC
size range: 200-600
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Apr 28, 2023 |
| Last update date |
May 02, 2023 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL18573 |
| Series (1) |
| GSE231292 |
TF ChIP-seq from HCT116 (ENCSR979ZEO) |
|
| Relations |
| BioSample |
SAMN34251648 |
| SRA |
SRX20151080 |
