GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM736569

Query DataSets for GSM736569

Status

Public on Jun 03, 2011

Title

Stam_HCPEpiC_1

Sample type

SRA

Source name

HCPEpiC

Organism

Homo sapiens

Characteristics

cell: HCPEpiC
cell organism: Human
cell description: Human Choroid Plexus Epithelial Cells
cell sex: U
replicate: 1

Biomaterial provider

ScienCell

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:HCPEpiC_Stam_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Submission date

Jun 02, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (2)

GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

Relations

Reanalyzed by

Reanalyzed by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM736569_hg19_wgEncodeUwDnaseHcpeRawRep1.bigWig

Supplementary file	Size	Download	File type/resource
GSM736569_hg19_wgEncodeUwDnaseHcpeAlnRep1.bam	1.0 Gb	(ftp)(http)	BAM
GSM736569_hg19_wgEncodeUwDnaseHcpeHotspotsRep1.broadPeak.gz	3.2 Mb	(ftp)(http)	BROADPEAK
GSM736569_hg19_wgEncodeUwDnaseHcpePkRep1.narrowPeak.gz	2.3 Mb	(ftp)(http)	NARROWPEAK
GSM736569_hg19_wgEncodeUwDnaseHcpeRawRep1.bigWig	103.4 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file