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Sample GSM736580 Query DataSets for GSM736580
Status Public on Jun 03, 2011
Title Stam_A549_1
Sample type SRA
 
Source name A549
Organism Homo sapiens
Characteristics cell: A549
cell organism: Human
cell description: epithelial cell line "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old Caucasian male." - ATCC, derived from a lung carcinoma tissue. (PMID: 175022)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
replicate: 1
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/HudsonAlpha:A549_protocol.pdf Duke/UNC/UTA/EBI_Open_Chromatin:A549_Crawford_protocol.pdf UW_Stam:A549_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069173
BioSample SAMN00622298
Named Annotation GSM736580_hg19_wgEncodeUwDnaseA549RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736580_hg19_wgEncodeUwDnaseA549AlnRep1.bam 1.3 Gb (ftp)(http) BAM
GSM736580_hg19_wgEncodeUwDnaseA549HotspotsRep1.broadPeak.gz 3.4 Mb (ftp)(http) BROADPEAK
GSM736580_hg19_wgEncodeUwDnaseA549PkRep1.narrowPeak.gz 1.3 Mb (ftp)(http) NARROWPEAK
GSM736580_hg19_wgEncodeUwDnaseA549RawRep1.bigWig 139.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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