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Sample GSM736598 Query DataSets for GSM736598
Status Public on Jun 03, 2011
Title Stam_AG10803_1
Sample type SRA
 
Source name AG10803
Organism Homo sapiens
Characteristics cell: AG10803
cell organism: Human
cell description: Adult human abdominal skin fibroblasts
cell lineage: mesoderm
cell sex: M
replicate: 1
Biomaterial provider Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG10803
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:AG10803_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069191
BioSample SAMN00622316
Named Annotation GSM736598_hg19_wgEncodeUwDnaseAg10803RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736598_hg19_wgEncodeUwDnaseAg10803AlnRep1.bam 1.2 Gb (ftp)(http) BAM
GSM736598_hg19_wgEncodeUwDnaseAg10803HotspotsRep1.broadPeak.gz 2.6 Mb (ftp)(http) BROADPEAK
GSM736598_hg19_wgEncodeUwDnaseAg10803PkRep1.narrowPeak.gz 1.9 Mb (ftp)(http) NARROWPEAK
GSM736598_hg19_wgEncodeUwDnaseAg10803RawRep1.bigWig 104.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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