NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM7988197 Query DataSets for GSM7988197
Status Public on Dec 22, 2023
Title Patient #316
Sample type protein
 
Source name CSF
Organism Homo sapiens
Characteristics Sex: Female
age: 44
group: Patient
Treatment protocol n/a
Growth protocol n/a
Extracted molecule protein
Extraction protocol Serum samples were assayed at three dilutions (40%, 1%, and 0.005%) with each sample dilution added to a corresponding subset of the 1,305 SOMAmer detection reagents binned according to manufacturer’s predicted target abundance in serum. Cerebrospinal fluid was run at a single 15% concentration dilution with protease inhibitors and polyanionic competitor reagent added.
Label n/a
Label protocol Labeling was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
 
Hybridization protocol Hypbridization was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
Scan protocol Scanning was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
Description Fatigue-134
Patient
Data processing Data processing was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA). In brief, systematic effects on the data introduced during the hybridization step were corrected followed by median normalization (i.e., hybNorm.plateScale.medNorm).
 
Submission date Dec 21, 2023
Last update date Dec 22, 2023
Contact name Avindra Nath
E-mail(s) avindra.nath@nih.gov
Phone 3014961561
Organization name NIH/NINDS
Street address 10 Center Drive
City Bethesda
State/province Maryland
ZIP/Postal code 20814
Country USA
 
Platform ID GPL28516
Series (2)
GSE251790 Deep phenotyping of Post-infectious Myalgic Encephalomyelitis/Chronic Fatigue Syndrome [Protein]
GSE251792 Deep phenotyping of Post-infectious Myalgic Encephalomyelitis/Chronic Fatigue Syndrome

Data table header descriptions
ID_REF
VALUE Linear intensity

Data table
ID_REF VALUE
SL019100 43.6
SL007136 51.9
SL001731 11987
SL019096 48.4
SL005173 70.5
SL007221 117.1
SL007108 133.8
SL000455 45.6
SL003755 38.8
SL014684 46.3
SL002565 32.8
SL004097 39.8
SL004101 59.4
SL005184 38.1
SL001728 288.2
SL001716 39.3
SL004396 55.1
SL007229 46.1
SL017128 246.3
SL001791 760.3

Total number of rows: 1317

Table truncated, full table size 19 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap