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Sample GSM7988207 Query DataSets for GSM7988207
Status Public on Dec 22, 2023
Title Patient #309
Sample type protein
 
Source name CSF
Organism Homo sapiens
Characteristics Sex: Male
age: 22
group: Patient
Treatment protocol n/a
Growth protocol n/a
Extracted molecule protein
Extraction protocol Serum samples were assayed at three dilutions (40%, 1%, and 0.005%) with each sample dilution added to a corresponding subset of the 1,305 SOMAmer detection reagents binned according to manufacturer’s predicted target abundance in serum. Cerebrospinal fluid was run at a single 15% concentration dilution with protease inhibitors and polyanionic competitor reagent added.
Label n/a
Label protocol Labeling was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
 
Hybridization protocol Hypbridization was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
Scan protocol Scanning was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
Description Fatigue-119
Patient
Data processing Data processing was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA). In brief, systematic effects on the data introduced during the hybridization step were corrected followed by median normalization (i.e., hybNorm.plateScale.medNorm).
 
Submission date Dec 21, 2023
Last update date Dec 22, 2023
Contact name Avindra Nath
E-mail(s) avindra.nath@nih.gov
Phone 3014961561
Organization name NIH/NINDS
Street address 10 Center Drive
City Bethesda
State/province Maryland
ZIP/Postal code 20814
Country USA
 
Platform ID GPL28516
Series (2)
GSE251790 Deep phenotyping of Post-infectious Myalgic Encephalomyelitis/Chronic Fatigue Syndrome [Protein]
GSE251792 Deep phenotyping of Post-infectious Myalgic Encephalomyelitis/Chronic Fatigue Syndrome

Data table header descriptions
ID_REF
VALUE Linear intensity

Data table
ID_REF VALUE
SL019100 29.1
SL007136 15.5
SL001731 25994.3
SL019096 13.1
SL005173 106.5
SL007221 142.1
SL007108 335
SL000455 44.4
SL003755 71.9
SL014684 36.1
SL002565 32.3
SL004097 68.4
SL004101 46.3
SL005184 56.3
SL001728 453.3
SL001716 21.9
SL004396 23.1
SL007229 70.9
SL017128 236.6
SL001791 1114.4

Total number of rows: 1317

Table truncated, full table size 19 Kbytes.




Supplementary data files not provided

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