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Sample GSM7988212 Query DataSets for GSM7988212
Status Public on Dec 22, 2023
Title Patient #305
Sample type protein
 
Source name CSF
Organism Homo sapiens
Characteristics Sex: Female
age: 38
group: Patient
Treatment protocol n/a
Growth protocol n/a
Extracted molecule protein
Extraction protocol Serum samples were assayed at three dilutions (40%, 1%, and 0.005%) with each sample dilution added to a corresponding subset of the 1,305 SOMAmer detection reagents binned according to manufacturer’s predicted target abundance in serum. Cerebrospinal fluid was run at a single 15% concentration dilution with protease inhibitors and polyanionic competitor reagent added.
Label n/a
Label protocol Labeling was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
 
Hybridization protocol Hypbridization was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
Scan protocol Scanning was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA).
Description Fatigue-114
Patient
Data processing Data processing was performed according to manufacturers instructions for the SOMAscan Assay v3.2 standard protocol (SomaLogic, Boulder, CO, USA). In brief, systematic effects on the data introduced during the hybridization step were corrected followed by median normalization (i.e., hybNorm.plateScale.medNorm).
 
Submission date Dec 21, 2023
Last update date Dec 22, 2023
Contact name Avindra Nath
E-mail(s) avindra.nath@nih.gov
Phone 3014961561
Organization name NIH/NINDS
Street address 10 Center Drive
City Bethesda
State/province Maryland
ZIP/Postal code 20814
Country USA
 
Platform ID GPL28516
Series (2)
GSE251790 Deep phenotyping of Post-infectious Myalgic Encephalomyelitis/Chronic Fatigue Syndrome [Protein]
GSE251792 Deep phenotyping of Post-infectious Myalgic Encephalomyelitis/Chronic Fatigue Syndrome

Data table header descriptions
ID_REF
VALUE Linear intensity

Data table
ID_REF VALUE
SL019100 38.4
SL007136 25
SL001731 12316.3
SL019096 26.7
SL005173 126.4
SL007221 153
SL007108 195.6
SL000455 52.3
SL003755 59
SL014684 34.6
SL002565 34
SL004097 72.2
SL004101 50.7
SL005184 53.7
SL001728 456.6
SL001716 23
SL004396 26.1
SL007229 71.7
SL017128 247.6
SL001791 812.6

Total number of rows: 1317

Table truncated, full table size 19 Kbytes.




Supplementary data files not provided

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