|
Status |
Public on Feb 27, 2024 |
Title |
Histone ChIP-seq from BLaER1 (ENCLB901EKN) |
Sample type |
SRA |
|
|
Source name |
Homo sapiens BLaER1 cell line 24 hours after the sample was treated with 100 nM 17beta-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
|
Organism |
Homo sapiens |
Characteristics |
antibody: H4K20me1 line: BLaER1 biomaterial_type: cell line biosample encode accession: ENCBS528BRE (SAMN40088265) collection date: not applicable geographic location: not applicable encode accession: ENCBS528BRE Sex: female dev stage: unknown age: unknown donor_id: ENCDO305PTK lab: Roderic Guigo, CRG source: Thomas Graf treatments: treatment_term_id: CHEBI:16469; treatment_term_name: 17beta-estradiol; treatment_type: chemical; treatment_term_id: UniProtKB:P08700; treatment_term_name: Interleukin-3; treatment_type: protein; treatment_term_id: UniProtKB:P09603; treatment_term_name: CSF1; treatment_type: protein; link: ENCBS528BRE at ENCODE; https://www.encodeproject.org/ENCBS528BRE/
|
Extracted molecule |
genomic DNA |
Extraction protocol |
general protocol: https://www.encodeproject.org/documents/74685878-ae42-4070-955a-b3faabf64d44/@@download/attachment/growth_and_transdifferentiation.pdf, general protocol: https://www.encodeproject.org/documents/a60eb23e-58cd-4b29-a925-cf0c3d7d2e42/@@download/attachment/chromatin_immunoprecipitation.pdf, pipeline protocol: https://www.encodeproject.org/documents/cbec7655-48a2-4166-af75-d71b44e00f46/@@download/attachment/ChIP-seq_data_processing.pdf
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|
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
https://www.encodeproject.org/experiments/ENCSR980ZJN/ *************** biological replicate number: 1 technical replicate number: 1 description: H4K20me1 ChIP-Seq on BLaER1 cell line after 24 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1. experiment encode accession: ENCSR980ZJN assay title: Histone ChIP-seq assembly: GRCh38 possible controls: ENCSR954ZQC encode release date: 2022-05-10 lab: Roderic Guigo, CRG library encode accession: ENCLB901EKN fragmentation methods: shearing (Covaris generic)
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Data processing |
See GSM*_README.txt supplementary file linked below
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|
|
Submission date |
Feb 25, 2024 |
Last update date |
Mar 13, 2024 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE258929 |
Histone ChIP-seq from BLaER1 (ENCSR980ZJN) |
|
Relations |
BioSample |
SAMN40088265 |
Named Annotation |
GSM8110725_ENCFF232ILH_signal_p-value_GRCh38.bigWig |
Named Annotation |
GSM8110725_ENCFF874FRT_fold_change_over_control_GRCh38.bigWig |
Named Annotation |
GSM8110725_ENCFF211RYH_fold_change_over_control_GRCh38.bigWig |
Named Annotation |
GSM8110725_ENCFF383RGP_signal_p-value_GRCh38.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM8110725_ENCFF054MZE_peaks_GRCh38.bigBed |
4.0 Mb |
(ftp)(http) |
BIGBED |
GSM8110725_ENCFF211RYH_fold_change_over_control_GRCh38.bigWig |
990.5 Mb |
(ftp)(http) |
BIGWIG |
GSM8110725_ENCFF232ILH_signal_p-value_GRCh38.bigWig |
1.1 Gb |
(ftp)(http) |
BIGWIG |
GSM8110725_ENCFF383RGP_signal_p-value_GRCh38.bigWig |
1.3 Gb |
(ftp)(http) |
BIGWIG |
GSM8110725_ENCFF515TIV_pseudoreplicated_peaks_GRCh38.bigBed |
1.8 Mb |
(ftp)(http) |
BIGBED |
GSM8110725_ENCFF526TDN_peaks_GRCh38.bed.gz |
2.4 Mb |
(ftp)(http) |
BED |
GSM8110725_ENCFF732DKS_pseudoreplicated_peaks_GRCh38.bed.gz |
1.0 Mb |
(ftp)(http) |
BED |
GSM8110725_ENCFF874FRT_fold_change_over_control_GRCh38.bigWig |
1.4 Gb |
(ftp)(http) |
BIGWIG |
GSM8110725_ENCLB901EKN_README.txt.gz |
1.4 Kb |
(ftp)(http) |
TXT |
Raw data are available in SRA |