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Sample GSM82459 Query DataSets for GSM82459
Status Public on Nov 11, 2005
Title SAGE library from ejaculate sperm of one fertile Chinese man
Sample type SAGE
Anchor NlaIII
Tag Count 20237
Tag Length 10
 
Source name spermatozoa
Organism Homo sapiens
Characteristics Human ejaculates were obtained from one healthy volunteers aged 33, who had no special medical record. The volunteer has fathered a healthy child. And normal semen quality as assessed according to WHO criteria (1999) was applied to the ejaculate samples.
Extracted molecule total RNA
Extraction protocol Total RNA of purified spermatozoa was extracted by Trizol RNA isolation reagent (Invitrogen, Carlsbad, California, USA)
 
Description Producer: Yangxing Zhao, Zhaoxia Wang and Zhongdong Qiao
The same method for spermatozoa separation was used as in that of GSM82243. Five separate ejaculates from the same volunteer were pooled together to get enough total RNA for the SAGE analysis.
Data processing SAGE2000 (Version 4.5)
 
Submission date Nov 09, 2005
Last update date Nov 19, 2008
Contact name Yangxing Zhao
E-mail(s) yangxingzhao2000@yahoo.com
Phone 86 21 34201092
Fax 86 21 54747330
Organization name Shanghai Jiao Tong University
Department School of Medicine
Street address 800 Dongchuan Rd.
City Shanghai
ZIP/Postal code 200240
Country China
 
Platform ID GPL4
Series (1)
GSE3587 Characterization of mRNA transcripts in spermatozoa of fertile men

Data table header descriptions
TAG TAG
COUNT Absolute tag count
TPM tags per million

Data table
TAG COUNT TPM
GGTTGAAAAA 569 28116.82
GCGTGCCTGC 276 13638.39
ATCACGAAGG 233 11513.56
GCCCCTGCGC 198 9784.06
CTAAAGAAGA 174 8598.11
CAGAAGGCAC 128 6325.05
GTGACCACGG 127 6275.63
GTGAAACCCC 98 4842.62
TGGACCAGGT 96 4743.79
AGGTGCTGCC 80 3953.16
AACGAGGAAT 79 3903.74
GTGAAACCCT 77 3804.91
CCACTGCACT 72 3557.84
CTTCCTTGAA 69 3409.60
ACGACTTGAA 65 3211.94
GTCCCTCTCA 65 3211.94
ATAATTCTTT 64 3162.52
CTAAGACTTC 64 3162.52
TTAGATCGTT 64 3162.52
TTTGGTCAAC 64 3162.52

Total number of rows: 10141

Table truncated, full table size 189 Kbytes.




Supplementary data files not provided

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