 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Mar 05, 2012 |
| Title |
HTR13 Myc ChIP-seq |
| Sample type |
SRA |
| |
|
| Source name |
HTR13 Myc ChIP-seq
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
ecotype: Col-0
tissue: 10 day seedlings
chip antibody: anti Myc antibody, clone 4A6
chip antibody vendor: Millipore
chip antibody cat. number: 05-724
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
ChIP-seq were generated and sequenced on HiSeq 2000 as per the manufacturer instructions (Illumina).
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Sample 2
|
| Data processing |
Alignment: Sequence reads were obtained and mapped to the TAIR8 Arabidospis genome using Bowtie (Langmead et al., 2009 Genome Biol). Uniquely mapping with two or fewer mismatches were retained. Reads mapping to identical positions were collapsed into one read.
HTR13_ChIP_mapped.txt; genome build: TAIR8
|
| |
|
| Submission date |
Jan 04, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Hume Stroud |
| Organization name |
UT Southwestern
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platform ID |
GPL13222 |
| Series (1) |
| GSE34840 |
Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana |
|
| Relations |
| SRA |
SRX113876 |
| BioSample |
SAMN00769621 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM856055_HTR13_ChIP_mapped.txt.gz |
177.8 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
|
|
|
|
 |
