|
| Status |
Public on Mar 05, 2012 |
| Title |
input genomic DNA for HTR13 |
| Sample type |
SRA |
| |
|
| Source name |
input genomic DNA for HTR13
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
ecotype: Col-0
tissue: 10 day seedlings
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
ChIP-seq were generated and sequenced on HiSeq 2000 as per the manufacturer instructions (Illumina).
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Sample 4
|
| Data processing |
Alignment: Sequence reads were obtained and mapped to the TAIR8 Arabidospis genome using Bowtie (Langmead et al., 2009 Genome Biol). Uniquely mapping with two or fewer mismatches were retained. Reads mapping to identical positions were collapsed into one read.
input_for_HTR13_ChIP_mapped.txt; genome build: TAIR8
|
| |
|
| Submission date |
Jan 04, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Hume Stroud |
| Organization name |
UT Southwestern
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platform ID |
GPL13222 |
| Series (1) |
| GSE34840 |
Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana |
|
| Relations |
| SRA |
SRX113878 |
| BioSample |
SAMN00769623 |
