 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Aug 29, 2012 |
| Title |
mRRBS 39 |
| Sample type |
SRA |
| |
|
| Source name |
mRRBS library 39
|
| Organism |
Homo sapiens |
| Characteristics |
mrrbs library: 39
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
mRRBS was performed according to the mRRBS protocol (Boyle et al. 2012)
|
| |
|
| Library strategy |
Bisulfite-Seq |
| Library source |
genomic |
| Library selection |
RANDOM |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Alignment: bisulfite-converted reads were aligned to the hg19 human genome using MAQ in bisulfite alignment mode using the following parameters: -D -s 0 -M c -e 100
Genome_build: hg19
Supplementary_files_format_and_content: Bed files contain the number of methylated and unmethylated reads for covered CpGs
|
| |
|
| Submission date |
Aug 28, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Kendell Clement |
| Organization name |
Harvard University
|
| Lab |
Meissner Lab
|
| Street address |
7 Divinity Ave.
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02138 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE40429 |
96 mRRBS libraries: Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA |
|
| Relations |
| SRA |
SRX181099 |
| BioSample |
SAMN01137266 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM993879_mRRBS_39.bb |
79.3 Mb |
(ftp)(http) |
BB |
SRA Run Selector |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
|
|
|
|
 |
