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Status |
Public on Aug 29, 2012 |
Title |
mRRBS 88 |
Sample type |
SRA |
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Source name |
mRRBS library 88
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Organism |
Homo sapiens |
Characteristics |
mrrbs library: 88
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Extracted molecule |
genomic DNA |
Extraction protocol |
mRRBS was performed according to the mRRBS protocol (Boyle et al. 2012)
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Library strategy |
Bisulfite-Seq |
Library source |
genomic |
Library selection |
RANDOM |
Instrument model |
Illumina HiSeq 2000 |
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Data processing |
Alignment: bisulfite-converted reads were aligned to the hg19 human genome using MAQ in bisulfite alignment mode using the following parameters: -D -s 0 -M c -e 100 Genome_build: hg19 Supplementary_files_format_and_content: Bed files contain the number of methylated and unmethylated reads for covered CpGs
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Submission date |
Aug 28, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Kendell Clement |
Organization name |
Harvard University
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Lab |
Meissner Lab
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Street address |
7 Divinity Ave.
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City |
Cambridge |
State/province |
MA |
ZIP/Postal code |
02138 |
Country |
USA |
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Platform ID |
GPL11154 |
Series (1) |
GSE40429 |
96 mRRBS libraries: Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA |
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Relations |
SRA |
SRX181148 |
BioSample |
SAMN01137315 |
Supplementary file |
Size |
Download |
File type/resource |
GSM993928_mRRBS_88.bb |
45.7 Mb |
(ftp)(http) |
BB |
SRA Run Selector |
Processed data are available on Series record |
Processed data provided as supplementary file |
Raw data are available in SRA |
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