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Status
Public on Feb 09, 2017
Title
[TomGene-1_1-st] Affymetrix Tomato Genome Array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Solanum lycopersicum Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
#%create_date=Mon Aug 5 12:39:13 PDT 2013
Submission date
Feb 27, 2016
Last update date
Feb 09, 2017
Contact name
Panagiotis Kalaitzis
E-mail(s)
panagiot@maich.gr Phone
+30 28210 35030
Organization name
Mediterranean Agronomic Institute of Chania (MAICh)
Department
Horticultural Genetics and Biotechnology
Street address
Alsyllio Agrokepio, 1 Makedonias str
City
Chania
ZIP/Postal code
73100
Country
Greece
Samples (78)
GSM2074861 , GSM2074862 , GSM2074863 , GSM2074864 , GSM2074865 , GSM2074866
GSM2074867 ,
GSM2074868 ,
GSM2074869 ,
GSM2830490 ,
GSM2830491 ,
GSM2830492 ,
GSM2830493 ,
GSM2830494 ,
GSM2830495 ,
GSM2830496 ,
GSM2830497 ,
GSM2830498 ,
GSM2830499 ,
GSM2830500 ,
GSM2830501 ,
GSM2830502 ,
GSM2830503 ,
GSM2830504 ,
GSM2830505 ,
GSM2830506 ,
GSM2830507 ,
GSM2830508 ,
GSM2830509 ,
GSM2830510 ,
GSM2830511 ,
GSM2830512 ,
GSM2830513 ,
GSM5568949 ,
GSM5568950 ,
GSM5568951 ,
GSM5568952 ,
GSM5568953 ,
GSM5568954 ,
GSM5568955 ,
GSM5568956 ,
GSM5568957 ,
GSM5568958 ,
GSM5568959 ,
GSM5568960 ,
GSM5568961 ,
GSM5568962 ,
GSM5568963 ,
GSM5568964 ,
GSM5568965 ,
GSM5568966 ,
GSM5568967 ,
GSM5568968 ,
GSM5568969 ,
GSM7665229 ,
GSM7665230 ,
GSM7665231 ,
GSM7665232 ,
GSM7665233 ,
GSM7665234 ,
GSM7665235 ,
GSM7665236 ,
GSM7665237 ,
GSM7665238 ,
GSM7665239 ,
GSM7665240 ,
GSM7665241 ,
GSM7665242 ,
GSM7665243 ,
GSM7665244 ,
GSM7665245 ,
GSM7665246 ,
GSM7665247 ,
GSM7665248 ,
GSM7665249 ,
GSM7665250 ,
GSM7665251 ,
GSM7665252 Series (4)
GSE78733 In Silico transcriptional regulatory networks during tomato fruit ripening
GSE106149 Expression data from leaflets and roots of the tomato res mutant and its background genotype, wild-type (WT) (Solanum lycopersicum L. cv. Moneymaker), grown in control conditions and salt stress
GSE183707 Expression data from Solanum lycopersicum after elicitor molecules treatment
GSE239448 Expression data from leaves of tomato (Solanum lycopersicum L. cv. MicroTom) plants subjected to 1000 Hz sound vibration (at 90 dB for 2 h for 3 consecutive days) and/or inoculated with Pst DC300.
Data table header descriptions ID probeset_id seqname strand start stop total_probes gene_assignment mrna_assignment GB_ACC SPOT_ID crosshyb_type category
Data table ID probeset_id seqname strand start stop total_probes gene_assignment mrna_assignment GB_ACC SPOT_ID crosshyb_type category 20227932
20227932
chr00
+
16437
18189
21
"Solyc00g005000.2.1 // --- // Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 GO:0006508 // --- // --- /// XM_004253160.1 // LOC101252163 // PREDICTED: Solanum lycopersicum protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC101252163), mRNA. // --- // ---"
"Solyc00g005000.2.1 // ITAG_eugene // Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 GO:0006508 // chr00 // --- // --- // --- // --- // --- /// XM_004253160.1 // blat // PREDICTED: Solanum lycopersicum protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC101252163), mRNA. // chr00 // --- // --- // --- // --- // ---"
XM_004253160.1
Solyc00g005000.2.1
1
main
20227935
20227935
chr00
+
68062
68764
9
Solyc00g005020.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g005020.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g005020.1.1
3
main
20227939
20227939
chr00
+
537903
552565
21
"XM_004253163.1 // LOC101254677 // PREDICTED: Solanum lycopersicum potassium channel KAT1-like (LOC101254677), mRNA. // --- // --- /// Solyc00g005040.2.1 // --- // Potassium channel (AHRD V1 ***- D0EM91_9ROSI); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding // --- // ---"
"XM_004253163.1 // blat // PREDICTED: Solanum lycopersicum potassium channel KAT1-like (LOC101254677), mRNA. // chr00 // --- // --- // --- // --- // --- /// Solyc00g005040.2.1 // ITAG_eugene // Potassium channel (AHRD V1 ***- D0EM91_9ROSI); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding // chr00 // --- // --- // --- // --- // ---"
XM_004253163.1
XM_004253163.1
1
main
20227947
20227947
chr00
+
1115784
1117712
20
Solyc00g005100.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g005100.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g005100.1.1
1
main
20227950
20227950
chr00
+
1204073
1206088
9
"Solyc00g005150.1.1 // --- // HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5VNQ7_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 // --- // --- /// XM_004253164.1 // LOC101255573 // PREDICTED: Solanum lycopersicum uncharacterized LOC101255573 (LOC101255573), mRNA. // --- // ---"
"Solyc00g005150.1.1 // ITAG_eugene // HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5VNQ7_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 // chr00 // --- // --- // --- // --- // --- /// XM_004253164.1 // blat // PREDICTED: Solanum lycopersicum uncharacterized LOC101255573 (LOC101255573), mRNA. // chr00 // --- // --- // --- // --- // ---"
XM_004253164.1
Solyc00g005150.1.1
3
main
20227956
20227956
chr00
+
1735071
1735289
14
Solyc00g005180.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g005180.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g005180.1.1
1
main
20227958
20227958
chr00
+
2190961
2191463
17
Solyc00g005280.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g005280.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g005280.1.1
1
main
20227961
20227961
chr00
+
2244285
2244817
14
Solyc00g005420.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g005420.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g005420.1.1
1
main
20227964
20227964
chr00
+
2466347
2466610
25
Solyc00g005450.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g005450.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g005450.1.1
1
main
20227966
20227966
chr00
+
2612588
2614203
14
"Solyc00g005480.1.1 // --- // Ubiquitin carrier protein (AHRD V1 *-*- A5B6X4_VITVI); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 GO:0043687 // --- // ---"
"Solyc00g005480.1.1 // ITAG_eugene // Ubiquitin carrier protein (AHRD V1 *-*- A5B6X4_VITVI); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 GO:0043687 // chr00 // --- // --- // --- // --- // ---"
Solyc00g005480.1.1
1
main
20227970
20227970
chr00
+
2763974
2764456
8
Solyc00g005490.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g005490.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g005490.1.1
1
main
20227972
20227972
chr00
+
3434263
3434662
8
Solyc00g005860.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g005860.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g005860.1.1
3
main
20227975
20227975
chr00
+
3537710
3547496
11
"XM_004253170.1 // LOC101264198 // PREDICTED: Solanum lycopersicum glutathione S-transferase PARB-like (LOC101264198), mRNA. // --- // ---"
"XM_004253170.1 // blat // PREDICTED: Solanum lycopersicum glutathione S-transferase PARB-like (LOC101264198), mRNA. // chr00 // --- // --- // --- // --- // ---"
XM_004253170.1
XM_004253170.1
1
main
20227981
20227981
chr00
+
3916175
3916960
15
Solyc00g005980.1.1 // --- // Zinc finger CCHC-type (AHRD V1 *--- Q1SKZ9_MEDTR) // --- // ---
Solyc00g005980.1.1 // ITAG_eugene // Zinc finger CCHC-type (AHRD V1 *--- Q1SKZ9_MEDTR) // chr00 // --- // --- // --- // --- // ---
Solyc00g005980.1.1
1
main
20227983
20227983
chr00
+
3944223
3944801
15
Solyc00g006010.1.1 // --- // Unknown Protein (AHRD V1) // --- // ---
Solyc00g006010.1.1 // ITAG_eugene // Unknown Protein (AHRD V1) // chr00 // --- // --- // --- // --- // ---
Solyc00g006010.1.1
1
main
20227985
20227985
chr00
+
3945103
3945420
11
Solyc00g006020.1.1 // --- // Endonuclease/exonuclease/phosphatase (AHRD V1 ***- A2Q500_MEDTR) // --- // ---
Solyc00g006020.1.1 // ITAG_eugene // Endonuclease/exonuclease/phosphatase (AHRD V1 ***- A2Q500_MEDTR) // chr00 // --- // --- // --- // --- // ---
Solyc00g006020.1.1
1
main
20227987
20227987
chr00
+
3973451
3974270
10
"Solyc00g006050.1.1 // --- // Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0055114 // --- // ---"
"Solyc00g006050.1.1 // ITAG_eugene // Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0055114 // chr00 // --- // --- // --- // --- // ---"
Solyc00g006050.1.1
3
main
20227990
20227990
chr00
+
4009712
4010700
8
Solyc00g006090.1.1 // --- // Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR) // --- // ---
Solyc00g006090.1.1 // ITAG_eugene // Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR) // chr00 // --- // --- // --- // --- // ---
Solyc00g006090.1.1
1
main
20227994
20227994
chr00
+
4036934
4039640
8
"XM_004253176.1 // LOC101268376 // PREDICTED: Solanum lycopersicum uncharacterized LOC101268376 (LOC101268376), mRNA. // --- // ---"
"XM_004253176.1 // blat // PREDICTED: Solanum lycopersicum uncharacterized LOC101268376 (LOC101268376), mRNA. // chr00 // --- // --- // --- // --- // ---"
XM_004253176.1
XM_004253176.1
1
main
20227999
20227999
chr00
+
4070003
4071463
18
"XM_004253177.1 // LOC101268668 // PREDICTED: Solanum lycopersicum uncharacterized LOC101268668 (LOC101268668), mRNA. // --- // ---"
"XM_004253177.1 // blat // PREDICTED: Solanum lycopersicum uncharacterized LOC101268668 (LOC101268668), mRNA. // chr00 // --- // --- // --- // --- // ---"
XM_004253177.1
XM_004253177.1
1
main
67795 35356 Kbytes .Supplementary data files not provided
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