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Status
Public on Oct 15, 2021
Title
NanoString nCounter CAR-T Characterization panel [NS_Hs_CART_v1.0]
Technology type
other
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
NanoString
Manufacture protocol
CodeSet Hybridization Setup MAN-10056 (https://www.nanostring.com/download_file/view/863/3778 ) + nCounter SPRINT® Profiler User Manual MAN-10017 (https://www.nanostring.com/download_file/view/254/3778 )
Submission date
Nov 13, 2020
Last update date
Sep 25, 2023
Contact name
Chrystel Marton
Organization name
UMR1098 INSERM
Street address
8 rue du Dr Jean-François-Xavier Girod
City
Besançon
ZIP/Postal code
25020
Country
France
Samples (161)
GSM4908559 , GSM4908560 , GSM4908561 , GSM4908562 , GSM4908563 , GSM4908564
GSM4908565 ,
GSM4908566 ,
GSM4908567 ,
GSM4908568 ,
GSM4908569 ,
GSM4908570 ,
GSM5655587 ,
GSM5655588 ,
GSM5655589 ,
GSM5655590 ,
GSM5655591 ,
GSM5655592 ,
GSM5655593 ,
GSM5655594 ,
GSM5655595 ,
GSM5655596 ,
GSM5655597 ,
GSM5655598 ,
GSM5655599 ,
GSM5655600 ,
GSM5655601 ,
GSM5655602 ,
GSM5655603 ,
GSM5655604 ,
GSM5655605 ,
GSM5655606 ,
GSM5655607 ,
GSM5655608 ,
GSM5655609 ,
GSM5655610 ,
GSM5655611 ,
GSM5655612 ,
GSM5655613 ,
GSM5655614 ,
GSM5655615 ,
GSM5655616 ,
GSM5655617 ,
GSM5655618 ,
GSM5655619 ,
GSM5655620 ,
GSM5655621 ,
GSM5655622 ,
GSM5655623 ,
GSM5655624 ,
GSM5655625 ,
GSM5655626 ,
GSM5655627 ,
GSM5655628 ,
GSM5655629 ,
GSM5655630 ,
GSM5655631 ,
GSM5655632 ,
GSM5655633 ,
GSM5655634 ,
GSM7142826 ,
GSM7142827 ,
GSM7142828 ,
GSM7142829 ,
GSM7142830 ,
GSM7142831 ,
GSM7142832 ,
GSM7142833 ,
GSM7142834 ,
GSM7142835 ,
GSM7142836 ,
GSM7142837 ,
GSM7657794 ,
GSM7657795 ,
GSM7657796 ,
GSM7657797 ,
GSM7802550 ,
GSM7802551 ,
GSM7802552 ,
GSM7802553 ,
GSM7802554 ,
GSM7802555 ,
GSM7802556 ,
GSM7802557 ,
GSM7802558 ,
GSM7802559 ,
GSM7802560 ,
GSM7802561 ,
GSM7802562 ,
GSM7802563 ,
GSM7802564 ,
GSM7802565 ,
GSM7802566 ,
GSM7802567 ,
GSM7802568 ,
GSM7802569 ,
GSM7802570 ,
GSM7802571 ,
GSM7802572 ,
GSM7802573 ,
GSM7802574 ,
GSM7802575 ,
GSM7802576 ,
GSM7802577 ,
GSM7802578 ,
GSM7802579 ,
GSM7802580 ,
GSM7802581 ,
GSM7802582 ,
GSM7802583 ,
GSM7802584 ,
GSM7802585 ,
GSM7802586 ,
GSM7802587 ,
GSM7802588 ,
GSM7802589 ,
GSM7802590 ,
GSM7802591 ,
GSM7802592 ,
GSM7802593 ,
GSM7802594 ,
GSM7802595 ,
GSM7802596 ,
GSM7802597 ,
GSM7802598 ,
GSM7802599 ,
GSM7802600 ,
GSM7802601 ,
GSM7802602 ,
GSM7802603 ,
GSM7802604 ,
GSM7802605 ,
GSM7802606 ,
GSM7802607 ,
GSM7802608 ,
GSM7802609 ,
GSM7802610 ,
GSM7802611 ,
GSM7802612 ,
GSM7802613 ,
GSM7802614 ,
GSM7802615 ,
GSM7802616 ,
GSM7802617 ,
GSM7802618 ,
GSM7802619 ,
GSM7802620 ,
GSM7802621 ,
GSM7802622 ,
GSM7802623 ,
GSM7802624 ,
GSM7802625 ,
GSM7802626 ,
GSM7802627 ,
GSM7802628 ,
GSM7802629 ,
GSM7802630 ,
GSM7802631 ,
GSM7802632 ,
GSM7802633 ,
GSM7802634 Series (7)
GSE161483 Nanostring CAR T Characterization panel comparing expression in cord blood-derived transgenic T cells cultured with IL-2 or with IL-7 and IL-15, peripheral blood-derived transgenic T cells cultured with IL-2
GSE186557 Optimized delivery of dual co-stimulation and anti-tumor activity using parallel chimeric antigen receptors (pCARs)
GSE228921 Neutralizing IFNγ improves safety without compromising efficacy of CAR-T cell therapy in B-cell malignancies I
GSE228924 Neutralizing IFNγ improves safety without compromising efficacy of CAR-T cell therapy in B-cell malignancies
GSE238010 Integration of multisector molecular characterization into a personalized peptide vaccine approach for patients with newly diagnosed glioblastoma; Gene expression using NanoString CAR-T Characterization Panel
GSE238012 Primary human glioblastoma
GSE243973 Circulating monocyte counts coupled with a 4-gene signature at leukapheresis predict survival of lymphoma patients treated with CAR T
Data table header descriptions ID DESCRIPTION official gene name
GB_ACC GenBank Accession number
SPOT_ID alternative spot identifier (positive and negative controls)
SEQUENCE RNA sequence targeted by the probe
TYPE Type of probe, endogenous = measured gene, housekeeping gene = used for normalization, positive and negative = internal controls
Data table ID DESCRIPTION GB_ACC SPOT_ID SEQUENCE TYPE POS_A
ERCC_00117.1
positive
POS_B
ERCC_00112.1
positive
POS_C
ERCC_00002.1
positive
POS_D
ERCC_00092.1
positive
POS_E
ERCC_00035.1
positive
POS_F
ERCC_00034.1
positive
NEG_A
ERCC_00096.1
negative
NEG_B
ERCC_00041.1
negative
NEG_C
ERCC_00019.1
negative
NEG_D
ERCC_00076.1
negative
NEG_E
ERCC_00098.1
negative
NEG_F
ERCC_00126.1
negative
NEG_G
ERCC_00144.1
negative
NEG_H
ERCC_00154.1
negative
ACACA
acetyl-CoA carboxylase alpha
NM_198834.1 GACATGAACACTGTACTGAACTACATCTTCTCTCACGCTCAAGTCACCAAGAAGAATCTTCTGGTCACAATGCTTATTGATCAGTTGTGTGGCCGGGACC
endogenous
ACAD10
acyl-CoA dehydrogenase family member 10
NM_001136538.1 AAATGGGGCTCCCTCCCACTGAGAACTGGAACTTCTATATGGCTTTTTCCTTTTTCCGTGTGGCTGCAATCCTACAGGGAGTCTACAAGCGATCACTCAC
endogenous
ACADVL
acyl-CoA dehydrogenase very long chain
NM_001270447.1 ATCTAAGTCCTTTGCTGTGGGAATGTTCAAAGGCCAGCTCACCACAGATCAGGTGTTCCCATACCCGTCCGTGCTCAACGAAGAGCAGACACAGTTTCTT
endogenous
ACOT2
acyl-CoA thioesterase 2
NM_006821.4 CTCAGGTCTGAATTCAAAATGGCCTCATCTCCTGCTGTCCTTCGAGCGTCCCGGCTGTACCAATGGAGCCTGAAGAGTTCGGCGCAGTTCCTGGGGTCTC
endogenous
ACSF2
acyl-CoA synthetase family member 2
NM_001288968.1 GATCCAGAAATTCAAACTTCGAGAGCAGATGGAACGACATCTAAATCTGTGAATAAAGCAGCAGGCCTGTCCTGGCCGGTTGGCTTGACTCTCTCCTGTC
endogenous
ACSL5
acyl-CoA synthetase long chain family member 5
NM_203379.1 CCAACATTGAAAGCAAAGCGAGGAGAGCTTTCCAAATACTTTCGGACCCAAATTGACAGCCTGTATGAGCACATCCAGGATTAGGATAAGGTACTTAAGT
endogenous
794 124 Kbytes .Supplementary data files not provided
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