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| Status |
Public on Apr 25, 2012 |
| Title |
[E-MTAB-935] GENCODE PCR-Seq Batch VII |
| Project |
ENCODE
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| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch VII, which targets annotations from Gencode 8 (March 2011).
ArrayExpress Release Date: 2012-02-01
Publication Title: GENCODE: producing a reference annotation for ENCODE
Publication Author List: Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R
Person Roles: submitter
Person Last Name: Gonzalez
Person First Name: Jose
Person Mid Initials: M
Person Email: jmg@sanger.ac.uk
Person Phone: -498006
Person Address: Wellcome Trust Genome Campus, Hinxton, UK
Person Affiliation: Wellcome Trust Sanger Institute
Person Roles: investigator
Person Last Name: Hubbard
Person First Name: Tim
Person Mid Initials:
Person Email: th@sanger.ac.uk
Person Phone: -498055
Person Address: Wellcome Trust Genome Campus, Hinxton, UK
Person Affiliation: Wellcome Trust Sanger Institute
Person Roles: investigator
Person Last Name: Reymond
Person First Name: Alexandre
Person Mid Initials:
Person Email: Alexandre.Reymond@unil.ch
Person Phone:
Person Address: Lausanne, Switzerland
Person Affiliation: University of Lausanne
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| Overall design |
Experimental Design: organism_part_comparison_design
Experimental Design: reference_design
Experimental Design: co-expression_design
Experimental Factor Name: ORGANISMPART
Experimental Factor Type: organism_part
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| Web link |
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
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| Citation(s) |
16925838 |
| Submission date |
Apr 25, 2012 |
| Last update date |
May 15, 2019 |
| Organization |
European Bioinformatics Institute |
| E-mail(s) |
miamexpress@ebi.ac.uk
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| Lab |
ArrayExpress
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| Street address |
Wellcome Trust Genome Campus
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| City |
Hinxton |
| State/province |
Cambridgeshire |
| ZIP/Postal code |
CB10 1SD |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (8)
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| GSM923031 |
[E-MTAB-935] polyA+_brain_6120217, Batch_7_brain |
| GSM923032 |
[E-MTAB-935] polyA+_heart_7082801A, Batch_7_heart |
| GSM923033 |
[E-MTAB-935] polyA+_kidney_7110096, Batch_7_kidney |
| GSM923034 |
[E-MTAB-935] polyA+_liver_6100188, Batch_7_liver |
| GSM923035 |
[E-MTAB-935] polyA+_lung_1100350, Batch_7_lung |
| GSM923036 |
[E-MTAB-935] polyA+_muscle_7040106, Batch_7_muscle |
| GSM923037 |
[E-MTAB-935] polyA+_spleen_6090097, Batch_7_spleen |
| GSM923038 |
[E-MTAB-935] polyA+_testis_7060321, Batch_7_testis |
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| Relations |
| SRA |
ERP001145 |
| ArrayExpress |
E-MTAB-935 |
| BioProject |
PRJNA161895 |
| Supplementary data files not provided |
SRA Run Selector |
| Processed data not provided for this record |
| Raw data are available in SRA |
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