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Series GSE38167 Query DataSets for GSE38167
Status Public on Nov 24, 2014
Title Decreased expression of key tumour suppressor microRNAs is associated with lymph node metastases in triple negative breast cancer
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Breast cancer is the most common malignancy that develops in women, responsible for the highest cancer-associated death rates. Triple negative breast cancers (TNBC) represent an important subtype that have an aggressive clinical phenotype, are associated with a higher likelihood of metastasis and are not responsive to current targeted therapies. miRNAs have emerged as an attractive candidate for molecular biomarkers and treatment targets in breast cancer, but their role in the progression of TNBC remains largely unexplored. This study has investigated miRNA expression profiles in 31 primary TNBC cases and in 13 lymph node metastases compared with 23 matched normal breast tissues to determine miRNAs associated with the initiation of this disease subtype and those associated with its metastasis. 71 miRNAs were differentially expressed in TNBC, the majority of which have previously been associated with breast cancer, including members of the miR-200 family and the miR-17-92 oncogenic cluster, suggesting that miRNAs involved in the initiation of TNBC are not subtype specific. However, the repertoire of miRNAs expressed in lymph node negative and lymph node positive TNBCs were largely distinct from one another. In particular, miRNA profiles associated with lymph node negative disease tended to be up-regulated, while those associated with lymph node positive disease were down-regulated and largely overlapped with the profiles of their matched lymph node metastases.
 
Overall design miRNA expression profiles were examined in 31 primary TNBC cases and in 13 lymph node metastases compared with 23 matched normal breast tissues
 
Contributor(s) Avery-Kiejda KA, Braye SG, Forbes JF, Scott RJ
Citation(s) 24479446
Submission date May 23, 2012
Last update date Nov 24, 2014
Contact name Kelly Kiejda
E-mail(s) Kelly.Kiejda@newcastle.edu.au
Organization name University of Newcastle
Street address HMRI
City New Lambton Heights
State/province NSW
ZIP/Postal code 2305
Country Australia
 
Platforms (1)
GPL14943 Agilent-029297 Human miRNA Microarray (Feature Number version)
Samples (67)
GSM936126 Patient 1_NAT
GSM936127 Patient 1_IDC
GSM936128 Patient 1_LN
Relations
BioProject PRJNA167355

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE38167_RAW.tar 54.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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