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Series GSE43020 Query DataSets for GSE43020
Status Public on Jan 30, 2014
Title Effect of genetic Zfx deletion on gene expression in Notch induced T-ALL
Organism Mus musculus
Experiment type Expression profiling by array
Summary Acute myeloid leukemia (AML) and acute T-lymphoblastic leukemia (T-ALL) maintain the undifferentiated phenotype and proliferative capacity of their respective cells of origin, hematopoietic stem/progenitor cells and immature thymocytes. The mechanisms that maintain these progenitor-like characteristics are poorly understood. We report that the transcription factor Zfx is required for the development and propagation of experimental AML caused by MLL-AF9 fusion, and of T-ALL caused by Notch1 activation. In both leukemia types, Zfx activated progenitor-associated gene expression programs and prevented differentiation. Key Zfx target genes included mitochondrial enzymes Ptpmt1 and Idh2, whose overexpression partially rescued the propagation of Zfx-deficient AML. These studies identify a common mechanism that controls the cell-of-origin characteristics of acute leukemias derived from disparate lineages and transformation mechanisms.
 
Overall design Independent primary Notch induced T-ALL cell lines were created by retroviral transduction of Notch-IC into hematopoietic progenitors carrying the tamoxifen inducible Cre-ER transgene and the Zfx conditional (Zfx fl/y) allele (lines 14843, 14844, 14846). T-ALL cells generated from each line were isolated from moribund mice and transplanted into sublethally irradiated secondary recipients. Ten days after transplant when T-ALL cells had appeared in the blood of the secondary recipients, they were treated by gavage with either Vehicle or Tamoxifen (5 mg /day for three days) to induce Zfx deletion in leukemia cells. 48 hours after the final Tamoxifen treatment, the mice were sacrificed and T-ALL cells were recovered by FACS for microarray studies.
 
Contributor(s) Weisberg SP, Reizis BV
Citation(s) 24485662
Submission date Dec 19, 2012
Last update date Mar 04, 2019
Contact name Stuart Weisberg
E-mail(s) spw13@cumc.columbia.edu
Organization name Columbia University
Department Pathology and Cell Biology
Lab Weisberg
Street address 650 W 168th Street
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL6246 [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]
Samples (6)
GSM1055165 14843 - Veh
GSM1055166 14844 - Veh
GSM1055167 14846 - Veh
This SubSeries is part of SuperSeries:
GSE43022 ZFX controls the propagation and cell-of-origin characteristics of acute leukemia
Relations
BioProject PRJNA184064

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43020_RAW.tar 27.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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