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GEO accession:
Series GSE59821
Query DataSets for GSE59821
Status
Public on Feb 14, 2016
Title
Restrictions in amino acid availability revealed by differential ribosome codon reading
Organism
Homo sapiens
Experiment type
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
26878238
Submission date
Jul 28, 2014
Last update date
May 15, 2019
Contact name
Koos Rooijers
E-mail(s)
k.rooijers@nki.nl
Organization name
Netherlands Cancer Institute
Department
Gene Regulation
Lab
Agami Lab
Street address
Plesmanlaan 121
City
Amsterdam
ZIP/Postal code
1066CX
Country
Netherlands
Platforms (3)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL15520
Illumina MiSeq (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (51)
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GSM1446832
SUM1315 control RP
GSM1446833
SUM1315 harringtonine RP
GSM1446834
MCF10A control RP
GSM1446838
MCF10A torin RP
GSM1446874
Kidney normal tissue 1 RP
GSM1446875
Kidney normal tissue 2 RP
GSM1446876
Kidney tumor tissue 1 RP
GSM1446877
Kidney tumor tissue 2 RP
GSM1446878
Kidney tumor tissue 3 RP
GSM1446879
Kidney tumor tissue 4 RP
GSM1712825
Kidney normal tissue 1 RNAseq
GSM1712826
Kidney normal tissue 2 RNAseq
GSM1712827
Kidney tumor tissue 1 RNAseq
GSM1712828
Kidney tumor tissue 2 RNAseq
GSM1712829
Kidney tumor tissue 3 RNAseq
GSM1712830
Kidney tumor tissue 4 RNAseq
GSM1712831
Kidney normal tissue 1 tumor 2 RP
GSM1712832
Kidney normal tissue 2 tumor 2 RP
GSM1712833
Kidney tumor tissue 1 tumor 2 RP
GSM1712834
Kidney tumor tissue 2 tumor 2 RP
GSM1712835
Kidney tumor tissue 3 tumor 2 RP
GSM1712836
Kidney tumor tissue 4 tumor 2 RP
GSM1712843
MCF7 control batch7 RP
GSM1712844
T47D control batch7 RP
GSM1712845
MDAMB231 control batch7 RP
GSM1712846
Hs578t control batch7 RP
GSM1712847
MCF7 Glutamine starvation batch7 RP
GSM1712848
T47D Glutamine starvation batch7 RP
GSM1712849
MDAMB231 Glutamine starvation batch7 RP
GSM1712850
Hs578t Glutamine starvation batch7 RP
GSM1921989
PC3 control batch1 RP
GSM1921990
PC3 ASNase batch1 RP
GSM1921991
PC3 control batch2 RP
GSM1921992
PC3 ASNase 1 batch2 RP
GSM1921993
PC3 ASNase 2 batch2 RP
GSM1921994
MCF7 SG RP
GSM1921995
MCF7 IP50 RP
GSM1921996
MCF7 IP150 RP
GSM1921997
SUM159PT in vitro 1 repl1 RP
GSM1921998
SUM159PT in vitro 2 repl1 RP
GSM1921999
SUM159PT in vivo 1 repl1 RP
GSM1922000
SUM159PT in vivo 2 repl1 RP
GSM1922001
SUM159PT in vitro 1 repl2 RP
GSM1922002
SUM159PT in vitro 2 repl2 RP
GSM1922003
SUM159PT in vivo 1 repl2 RP
GSM1922004
SUM159PT in vivo 2 repl2 RP
GSM1922007
MCF10A starvation RP
GSM1922046
Kidney normal tissue tumor 3 RP
GSM1922047
Kidney tumor tissue tumor 3 RP
GSM1922048
Kidney normal tissue tumor 4 RP
GSM1922049
Kidney tumor tissue tumor 4 RP
This SuperSeries is composed of the following SubSeries:
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GSE59815
Ribosome profiling of harringtonine-treated SUM1315 cells
GSE59816
Ribosome profiling and RNA sequencing of MCF10A cells treated with torin or by serum starvation
GSE59820
Ribosome profiling on sections taken from a kidney tumor
GSE69923
Ribosome profiling on glutamine-starved panel of luminal and basal breast cancer cell lines
GSE74510
ASNase treatment in PC3 cells
GSE74511
Ribosome profiling on polysomes extracted via sucrose gradient and IP
GSE74512
Ribosome profiling on SUM159PT cells grown in vitro or in vivo
Relations
BioProject
PRJNA256314
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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Series Matrix File(s)
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Supplementary file
Size
Download
File type/resource
GSE59821_RAW.tar
695.5 Mb
(http)
(custom)
TAR (of WIG)
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