|
| Status |
Public on Feb 02, 2020 |
| Title |
Transcriptional regulation of tDNA in H9 ESCs |
| Platform organism |
Homo sapiens |
| Sample organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Third-party reanalysis
|
| Summary |
The localization of Pol III, TFIIIB, and TFIIIC in untreated H9 ESCs and after 48 hours of 50ng/mL Activin A treatment was determined by ChIP-seq.
|
| |
|
| Overall design |
3 replicates of H9 ESCs and 2 replictates of Activin A treated (endoderm)
|
| |
|
| Contributor(s) |
Giles KE, Woolnough JL |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Feb 02, 2017 |
| Last update date |
Feb 03, 2020 |
| Contact name |
keith e giles |
| E-mail(s) |
kegiles@uab.edu
|
| Phone |
205-934-4745
|
| Organization name |
University of Alabama at Birmingham
|
| Department |
Biochemistry & Molecular Genetics/ Stem Cell Institute
|
| Lab |
Keith Giles
|
| Street address |
1825 University Blvd/ SHEL 706
|
| City |
Birmingham |
| State/province |
AL |
| ZIP/Postal code |
35294 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (13)
|
| GSM2475071 |
Activin A Pol III ChIP-seq (RPC32) rep1 |
| GSM2475072 |
Activin A Pol III ChIP-seq (RPC32) rep2 |
| GSM2475073 |
H9 ESCs TFIIIB ChIP-seq (BRF1) rep1 |
| GSM2475074 |
H9 ESCs TFIIIB ChIP-seq (BRF1) rep2 |
| GSM2475075 |
Activin A TFIIIB ChIP-seq (BRF1) rep1 |
| GSM2475076 |
Activin A TFIIIB ChIP-seq (BRF1) rep2 |
| GSM2475077 |
H9 ESCs TFIIIC ChIP-seq (TFIIIC-110) rep1 |
| GSM2475078 |
H9 ESCs TFIIIC ChIP-seq (TFIIIC-110) rep2 |
| GSM2475079 |
Activin A TFIIIC ChIP-seq (TFIIIC-110) rep1 |
| GSM2475080 |
Activin A TFIIIC ChIP-seq (TFIIIC-110) rep2 |
|
| Relations |
| Reanalysis of |
GSM727601 |
| Reanalysis of |
GSM727557 |
| Reanalysis of |
GSM727561 |
| Reanalysis of |
GSM727583 |
| Reanalysis of |
GSM727586 |
| Reanalysis of |
GSM727569 |
| Reanalysis of |
GSM727572 |
| Reanalysis of |
GSM727596 |
| Reanalysis of |
GSM727577 |
| Reanalysis of |
GSM1648489 |
| Reanalysis of |
GSM1648490 |
| Reanalysis of |
GSM1648491 |
| Reanalysis of |
GSM1696045 |
| Reanalysis of |
GSM1696046 |
| Reanalysis of |
GSM1696047 |
| Reanalysis of |
GSM1006729 |
| Reanalysis of |
GSM1006730 |
| Reanalysis of |
GSM1006731 |
| BioProject |
PRJNA369653 |
| SRA |
SRP098736 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE94418_48hoursSCFdown.tsv.gz |
315.2 Kb |
(ftp)(http) |
TSV |
| GSE94418_GROseqisoACountTable.tsv.gz |
1.1 Kb |
(ftp)(http) |
TSV |
| GSE94418_H3K27me3Meta.tsv.gz |
47.3 Kb |
(ftp)(http) |
TSV |
| GSE94418_H3K4me3Meta.tsv.gz |
41.5 Kb |
(ftp)(http) |
TSV |
| GSE94418_InputMeta.tsv.gz |
29.4 Kb |
(ftp)(http) |
TSV |
| GSE94418_IsoacceptorCountTable.tsv.gz |
710 b |
(ftp)(http) |
TSV |
| GSE94418_Pol3CountTable.csv.gz |
5.8 Kb |
(ftp)(http) |
CSV |
| GSE94418_Pol3DownMeta.tsv.gz |
43.0 Kb |
(ftp)(http) |
TSV |
| GSE94418_Pol3Meta.tsv.gz |
37.3 Kb |
(ftp)(http) |
TSV |
| GSE94418_Pol3UpMeta.tsv.gz |
38.8 Kb |
(ftp)(http) |
TSV |
| GSE94418_RAW.tar |
240.0 Kb |
(http)(custom) |
TAR (of TSV) |
| GSE94418_SMADMeta.tsv.gz |
25.9 Kb |
(ftp)(http) |
TSV |
| GSE94418_SMADMetaDown.tsv.gz |
13.7 Kb |
(ftp)(http) |
TSV |
| GSE94418_SMADMetaUp.tsv.gz |
24.9 Kb |
(ftp)(http) |
TSV |
| GSE94418_TFIIIBDownMeta.tsv.gz |
31.0 Kb |
(ftp)(http) |
TSV |
| GSE94418_TFIIIBMeta.tsv.gz |
35.7 Kb |
(ftp)(http) |
TSV |
| GSE94418_TFIIIBUpMeta.tsv.gz |
39.0 Kb |
(ftp)(http) |
TSV |
| GSE94418_TFIIICMeta.tsv.gz |
114.4 Kb |
(ftp)(http) |
TSV |
| GSE94418_readme.txt.gz |
589 b |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
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