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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 10, 2017 |
| Title |
YAPC_RG1 |
| Sample type |
SRA |
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| Source name |
YAPC_Cas9 Cell Line
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| Organism |
Homo sapiens |
| Characteristics |
cell line: YAPC
grnas: RG
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA Isolation Kit: RNeasy Mini Kit - QIAGEN
Illumina stranded mRNA Library Prep
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Description |
(YAPC-Cas9 cells with Random gRNA1)
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| Data processing |
bam conversion (picard)
Re-calibrate BAM (prada)
RNAseqMatrics
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| Submission date |
Jul 21, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Jong Wook Kim |
| E-mail(s) |
jongw@broadinstitute.org
|
| Organization name |
Broad Institute
|
| Department |
Cancer Program
|
| Street address |
45 Main Street
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02138 |
| Country |
USA |
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| Platform ID |
GPL18573 |
| Series (1) |
| GSE84706 |
Experimental validation of candidate regulators of KRAS transcriptional components. |
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| Relations |
| BioSample |
SAMN05428654 |
| SRA |
SRX1969694 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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