|
| Status |
Public on Feb 08, 2024 |
| Title |
PB01009_tumor_roi001_Fibrosis |
| Sample type |
protein |
| |
|
| Source name |
PB01009_tumor_roi001_Fibrosis
|
| Organism |
Homo sapiens |
| Characteristics |
patient id: PB01009
tissue type: tumor
region of interest (roi) number: roi001
segment type: fibrous tissue enriched
positive immuno-fluorescent morphology marker: SMA
radiographic objective response: partial response (PR)
|
| Treatment protocol |
Pre-treatment tumor and liver biopsy tissues were obtained from patients with unresectable hepatocellular carcinoma trated with bavituximab and pembrolizumab.
|
| Growth protocol |
na
|
| Extracted molecule |
protein |
| Extraction protocol |
Refer to the NanoString Digital Spatial Profiling (DSP) GeoMx analysis manuals
|
| Label |
fluorescent barcode
|
| Label protocol |
Refer to the NanoString Digital Spatial Profiling (DSP) GeoMx analysis manuals
|
| |
|
| Hybridization protocol |
Refer to the NanoString Digital Spatial Profiling (DSP) GeoMx analysis manuals
|
| Scan protocol |
Refer to the NanoString Digital Spatial Profiling (DSP) GeoMx analysis manuals
|
| Description |
protein detected by antibody
|
| Data processing |
Raw count data of antibody-captured protein copy numbers in each segment were normalized by scaling with geometric mean of the counts of the housekeeping proteins
|
| |
|
| Submission date |
Sep 01, 2023 |
| Last update date |
Feb 08, 2024 |
| Contact name |
Yujin Hoshida |
| E-mail(s) |
Yujin.Hoshida@UTSouthwestern.edu
|
| Organization name |
University of Texas Southwestern Medical Center
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platform ID |
GPL33726 |
| Series (1) |
| GSE242154 |
Spatial immuno-oncology protein abundance profiles in hepatocellular carcinoma tissues from patients treated with bavituximab and pembrolizumab |
|
