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Items: 1 to 20 of 48

1.

CBX3 Regulates Efficient RNA Processing Genome Wide

(Submitter supplied) HP1 alpha, beta, and gamma play an evolutionarily conserved role in the formation and maintenance of heterochromatin. In addition, some HP1 family members may also participate in transcriptional regulation of genes. Recently, HP1 gamma binding to the bodies of a subset of genes has been observed in human and murine cells. However, the generality of this phenomenon and the role HP1 gamma may play in this context are unknown. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by genome tiling array; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing
8 related Platforms
39 Samples
Download data: BED, BEDGRAPH, GFF, GPR, PAIR
Series
Accession:
GSE28115
ID:
200028115

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

RenLab ENCODE PCR tiling array

(Submitter supplied) 24,537 non-repetitive sequences that are greater than 100 bps within the 44 ENCODE regions were PCR amplified. All the purified PCR products in a total of 66 384-well plates were spoted on glass slide using a contact printer. There are a total of 48 blocks, with 23 x 23 dimension in each array. Keywords = ENCODE Keywords = PCR tiling array Keywords = Bing Ren
Organism:
Homo sapiens
12 Series
280 Samples
Download data
Platform
Accession:
GPL1454
ID:
100001454

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10398 Series
180072 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:
Homo sapiens
1096 Series
9927 Samples
Download data
Platform
Accession:
GPL10999
ID:
100010999

5.

Illumina Genome Analyzer II (Homo sapiens)

Organism:
Homo sapiens
753 Series
6113 Samples
Download data
Platform
Accession:
GPL9115
ID:
100009115

6.

Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 01 of 4

(Submitter supplied) The 4 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 4 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 3 arrays. This is set 01. Protocol: Whole human genome tiling arrays
Organism:
Homo sapiens
4 Series
22 Samples
Download data
Platform
Accession:
GPL7874
ID:
100007874

7.

Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 04 of 4

(Submitter supplied) The 4 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 4 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 3 arrays. This is set 04. Protocol: Whole human genome tiling arrays
Organism:
Homo sapiens
4 Series
22 Samples
Download data
Platform
Accession:
GPL7881
ID:
100007881

8.

Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 03 of 4

(Submitter supplied) The 4 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 4 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 3 arrays. This is set 03. Protocol: Whole human genome tiling arrays
Organism:
Homo sapiens
4 Series
22 Samples
Download data
Platform
Accession:
GPL7880
ID:
100007880

9.

Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 02 of 4

(Submitter supplied) The 4 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 4 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 3 arrays. This is set 02. Protocol: Whole human genome tiling arrays
Organism:
Homo sapiens
4 Series
22 Samples
Download data
Platform
Accession:
GPL7879
ID:
100007879

10.

ChIP-chip of MDA-MB-231 cells; array 1 of 4

Organism:
Homo sapiens
Source name:
ChIP DNA from MDA-MB-231 cells (channel 1) Input DNA from MDA-MB-231 cells (channel 2)
Platform:
GPL7874
Series:
GSE28115
Download data: GFF, PAIR
Sample
Accession:
GSM701856
ID:
300701856

11.

ChIP-chip of K562 cells; array 1 of 4

Organism:
Homo sapiens
Source name:
ChIP DNA from K562 cells (channel 1) Input DNA from K562 cells (channel 2)
Platform:
GPL7874
Series:
GSE28115
Download data: GFF, PAIR
Sample
Accession:
GSM701855
ID:
300701855

12.

ChIP-chip of HCT116 cells; array 1 of 4

Organism:
Homo sapiens
Source name:
ChIP DNA from HCT116 cells (channel 1) Input DNA from HCT116 cells (channel 2)
Platform:
GPL7874
Series:
GSE28115
Download data: GFF, PAIR
Sample
Accession:
GSM701854
ID:
300701854

13.

ChIP-chip of MDA-MB-231 cells; array 4 of 4

Organism:
Homo sapiens
Source name:
ChIP DNA from MDA-MB-231 cells (channel 1) Input DNA from MDA-MB-231 cells (channel 2)
Platform:
GPL7881
Series:
GSE28115
Download data: GFF, PAIR
Sample
Accession:
GSM701870
ID:
300701870

14.

ChIP-chip of K562 cells; array 4 of 4

Organism:
Homo sapiens
Source name:
ChIP DNA from K562 cells (channel 1) Input DNA from K562 cells (channel 2)
Platform:
GPL7881
Series:
GSE28115
Download data: GFF, PAIR
Sample
Accession:
GSM701869
ID:
300701869

15.

ChIP-chip of HCT116 cells; array 4 of 4

Organism:
Homo sapiens
Source name:
ChIP DNA from HCT116 cells (channel 1) Input DNA from HCT116 cells (channel 2)
Platform:
GPL7881
Series:
GSE28115
Download data: GFF, PAIR
Sample
Accession:
GSM701868
ID:
300701868

16.

Input_HCT116-WT_TNF-treatment_rep2

Organism:
Homo sapiens
Source name:
human colorectal carcinoma cell line HCT116
Platform:
GPL10999
Series:
GSE28115
Download data: BED, BEDGRAPH
Sample
Accession:
GSM898227
ID:
300898227

SRA Run Selector

17.

Input_HCT116-WT_no-treatment_rep2

Organism:
Homo sapiens
Source name:
human colorectal carcinoma cell line HCT116
Platform:
GPL10999
Series:
GSE28115
Download data: BED, BEDGRAPH
Sample
Accession:
GSM898226
ID:
300898226

SRA Run Selector

18.

HP1-gamma_HCT116-WT_TNF-treatment_rep2

Organism:
Homo sapiens
Source name:
human colorectal carcinoma cell line HCT116
Platform:
GPL10999
Series:
GSE28115
Download data: BED, BEDGRAPH
Sample
Accession:
GSM898225
ID:
300898225

SRA Run Selector

19.

HP1-gamma_HCT116-WT_no-treatment_rep2

Organism:
Homo sapiens
Source name:
human colorectal carcinoma cell line HCT116
Platform:
GPL10999
Series:
GSE28115
Download data: BED, BEDGRAPH
Sample
Accession:
GSM898224
ID:
300898224

SRA Run Selector

20.

Input_HCT116-WT_TNFa-treatment_rep1

Organism:
Homo sapiens
Source name:
human colorectal carcinoma cell line HCT116
Platform:
GPL10999
Series:
GSE28115
Download data: BED, BEDGRAPH
Sample
Accession:
GSM699736
ID:
300699736

SRA Run Selector

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