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Series GSE162521 Query DataSets for GSE162521
Status Public on Mar 18, 2021
Title Unique human beta-cell senescence-associated secretory phenotype (SASP) reveal conserved signaling pathways and heterogeneous factors
Organism Homo sapiens
Experiment type Protein profiling by protein array
Summary The aging of pancreatic beta-cells may undermine their ability to compensate for insulin resistance, leading to the development of type 2 diabetes (T2D). Aging beta-cells acquire markers of cellular senescence and develop a senescence-associated secretory phenotype (SASP) that can lead to senescence and dysfunction of neighboring cells through paracrine actions, contributing to beta-cell failure. Herein, we defined the beta-cell SASP signature based on unbiased proteomic analysis of conditioned media of cells obtained from human senescent beta-cells. These experiments revealed that the beta-cell SASP is enriched for factors associated with inflammation, cellular stress response, and extracellular matrix remodeling across species.
 
Overall design After FACS-sorting, beta-Gal-positive and negative primary beta-cells were plated in 96-well plates and incubated in serum-free islet media to generate conditioned media. Conditioned media were analyzed using SomaScan at the Genomics Proteomics Core at Beth Israel Deaconess Medical Center.
 
Contributor(s) Midha A, Aguayo-Mazzucato C
Citation(s) 33674410
Submission date Dec 02, 2020
Last update date Mar 18, 2021
Contact name Hui Pan
E-mail(s) Hui.Pan@joslin.harvard.edu
Organization name Joslin Diabetes Center
Department Bioinformatics and Biostatistics Core
Street address 1 Joslin Place
City Boston
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL28516 SOMAscan human proteomic assay
Samples (27)
GSM4953750 S1402 G4
GSM4953751 S4807 C1
GSM4953752 S601 C3
Relations
BioProject PRJNA682140

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162521_HMS-20-020_v3.2_other.hybNorm.medNorm.20200915.data.gz 133.0 Kb (ftp)(http) DATA
Processed data included within Sample table

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